Publications

Publications

2023 5
2022 4
2021 3
2020 5
2019 7
2018 2
2017 1
2016 1
2014 4
2013 2
2012 1
2011 3
2010 2
2009 1

2023

Noell SE, Hellweger FL, Temperton B, Giovannoni SJ. 2023. A Reduction of Transcriptional Regulation in Aquatic Oligotrophic Microorganisms Enhances Fitness in Nutrient-Poor Environments. Microbiology and Molecular Biology Reviews 0:e00124-22. DOI: 10.1128/mmbr.00124-22. Permalink

Debnath SC, McMurtrie J, Temperton B, Delamare-Deboutteville J, Mohan CV, Tyler CR. 2023. Tilapia aquaculture, emerging diseases, and the roles of the skin microbiomes in health and disease. Aquaculture International. DOI: 10.1007/s10499-023-01117-4. Permalink

Alathari S, Chaput DL, Bolaños LM, Joseph A, Jackson VLN, Verner-Jeffreys D, Paley R, Tyler CR, Temperton B. 2023. A Multiplexed, Tiled PCR Method for Rapid Whole-Genome Sequencing of Infectious Spleen and Kidney Necrosis Virus (ISKNV) in Tilapia. Viruses 15:965. DOI: 10.3390/v15040965. Permalink

Williams J, Severin J, Temperton B, Mitchelmore PJ. 2023. Phage Therapy Administration Route, Regimen, and Need for Supplementary Antibiotics in Patients with Chronic Suppurative Lung Disease. PHAGE 4:4–10. DOI: 10.1089/phage.2022.0036. Permalink

Bell AG, Thornber K, Chaput DL, Hasan NA, Mehedi Alam Md, Haque MM, Cable J, Temperton B, Tyler CR. 2023. Metagenomic assessment of the diversity and ubiquity of antimicrobial resistance genes in Bangladeshi aquaculture ponds. Aquaculture Reports 29:101462. DOI: 10.1016/j.aqrep.2023.101462. Permalink

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2022

Bolaños LM, Tait K, Somerfield PJ, Parsons RJ, Giovannoni SJ, Smyth T, Temperton B. 2022. Influence of short and long term processes on SAR11 communities in open ocean and coastal systems. ISME Communications 2:1–11. DOI: 10.1038/s43705-022-00198-1. Permalink

McMurtrie J, Alathari S, Chaput DL, Bass D, Ghambi C, Nagoli J, Delamare-Deboutteville J, Mohan CV, Cable J, Temperton B, Tyler CR. 2022. Relationships between pond water and tilapia skin microbiomes in aquaculture ponds in Malawi. Aquaculture 558:738367. DOI: 10.1016/j.aquaculture.2022.738367. Permalink

Holger H Buchholz, Luis M Bolaños, Ashley G Bell, Michelle L Michelsen, Michael J Allen, Ben Temperton. 2022. bioRxiv 2022.08.10.503363 Permalink

Buchholz HH, Bolaños LM, Bell AG, Michelsen ML, Allen MJ, Temperton B. 2022. A Novel and Ubiquitous Marine Methylophage Provides Insights into Viral-Host Coevolution and Possible Host-Range Expansion in Streamlined Marine Heterotrophic Bacteria. Applied and Environmental Microbiology 88:e00255-22. DOI: 10.1128/aem.00255-22. Permalink

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2021

Buchholz HH, Michelsen ML, Bolaños LM, Browne E, Allen MJ, Temperton B. 2021. Efficient dilution-to-extinction isolation of novel virus–host model systems for fastidious heterotrophic bacteria. The ISME Journal 15:1585–1598. DOI: 10.1038/s41396-020-00872-z. Permalink

Zablocki O, Michelsen M, Burris M, Solonenko N, Warwick-Dugdale J, Ghosh R, Pett-Ridge J, Sullivan MB, Temperton B. 2021. VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature. PeerJ 9:e11088. DOI: 10.7717/peerj.11088. Permalink

Buchholz HH, Michelsen ML, Parsons R, Bates NR, Temperton B. Draft genomes of Pelagimyophage Mosig EXVC030M and Pelagipodophage Lederberg EXVC029P isolated from Devil’s Hole in Bermuda. Submitted to MSA Permalink

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2020

Gregory AC, Gerhardt K, Zhong Z, Bolduc B, Temperton B, Konstantinidis K, Sullivan MB. MetaPop: A pipeline for macro- and micro-diversity analyses and visualization of microbial and viral metagenome-derived populations Permalink

Lucchesi A, Henson M, Temperton B, and Thrash JC. Complete genome of Marinobacterium sp. strain LSUCC0821, isolated from the coastal Gulf of Mexico. Submitted to MSA. Permalink

Knipe H, Temperton B, Lange A, Bass D, Tyler C. Probiotics and competitive exclusion of pathogens in shrimp aquaculture. Reviews in Aquaculture Permalink

The COVID-19 Genomics UK (COG-UK) consortium. An integrated national scale SARS-CoV-2 genomic surveillance network. The Lancet Microbe Permalink

Henson MW, Lanclos VC, Pitre DM, Weckhorst JL, Lucchesi AM, Cheng C, Temperton B, Thrash JC 2020. Expanding the diversity of bacterioplankton isolates and modeling isolation efficacy with large scale dilution-to-extinction cultivation. bioarxiv Permalink

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2019

Manley R, Temperton B, Boots M, Wilfert L. 2019. Contrasting impacts of a novel specialist vector on multi-host viral pathogen epidemiology in wild and managed bees. Molecular Ecology doi:10.1111/mec.15333. Permalink

Witherall L, Wagley S, Butler C, Tyler CR, Temperton B. 2019. Genome Sequences of Four Vibrio parahaemolyticus Strains Isolated from the English Channel and the River Thames. Microbiology Resource Announcements 8:e00392–19. Permalink

Manley R, Temperton B, Doyle T, Gates D, Hedges S, Boots M, Wilfert L. 2019. Knock‐on community impacts of a novel vector: spillover of emerging DWV‐B from Varroa‐infested honeybees to wild bumblebees. Ecology letters 155:2011. Permalink

Giovannoni SJ, Halsey KH, Saw J, Muslin O, Suffridge CP, Sun J, Lee C-P, Moore ER, Temperton B, Noell SE. 2019. A Parasitic Arsenic Cycle That Shuttles Energy from Phytoplankton to Heterotrophic Bacterioplankton. mBio 10:e00246–19. Permalink

Warwick-Dugdale J, Solonenko N, Moore K, Chittick L, Gregory AC, Allen MJ, Sullivan MB, Temperton B. 2019. Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands. PeerJ 7:e6800 Permalink

Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez-Huerta G, Ferland J, Kandels S, Liu Y, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay J-É, Vik D, Acinas SG, Babin M, Bork P, Boss E, Bowler C, Cochrane G, de Vargas C, Follows M, Gorsky G, Grimsley N, Guidi L, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Karp-Boss L, Karsenti E, Not F, Ogata H, Poulton N, Raes J, Sardet C, Speich S, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Culley AI, Dutilh BE, Roux S. 2019. Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Cell 0. DOI: 10.1016/j.cell.2019.03.040. Permalink

Warwick-Dugdale J, Buchholz HH, Allen MJ, Temperton B. 2019. Host-hijacking and planktonic piracy: how phages command the microbial high seas. Virology. 16:15. Permalink

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2018

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee K-B, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit M-A, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA. 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature biotechnology. DOI: 10.1038/nbt.4306. Permalink

Martinez MA, Woodcroft BJ, Ignacio Espinoza JC, Zayed AA, Singleton CM, Boyd JA, Li Y-F, Purvine S, Maughan H, Hodgkins SB, Anderson D, Sederholm M, Temperton B, Bolduc B, Saleska SR, Tyson GW, Rich VI, Saleska SR, Tyson GW, Rich VI. 2018. Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Systematic and applied microbiology. DOI: 10.1016/j.syapm.2018.12.003. Permalink

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2017

Thrash JC, Seitz KW, Baker BJ, Temperton B, Gillies LE, Rabalais NN, Henrissat B, Mason OU. 2017. Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico “Dead Zone.” mBio 8. DOI: 10.1128/mBio.01017-17. Permalink

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2016

Learman DR, Henson MW, Thrash JC, Temperton B, Brannock PM, Santos SR, Mahon AR, Halanych KM. 2016. Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure. Frontiers in microbiology 7:284. Permalink

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2014

Airs RL, Temperton B, Sambles C, Farnham G, Skill SC, Llewellyn CA. 2014. Chlorophyll f and chlorophyll d are produced in the cyanobacterium Chlorogloeopsis fritschii when cultured under natural light and near-infrared radiation. FEBS letters 588:3770–3777. Permalink

Carini P, Campbell EO, Morré J, Sañudo-Wilhelmy SA, Cameron Thrash J, Bennett SE, Temperton B, Begley T, Giovannoni SJ. 2014. Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea. The ISME journal 8:1727–1738. Permalink

Thrash JC, Temperton B, Swan BK, Landry ZC, Woyke T, DeLong EF, Stepanauskas R, Giovannoni SJ. 2014. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. The ISME journal 8:1440–1451. Permalink

Giovannoni SJ, Cameron Thrash J, Temperton B. 2014. Implications of streamlining theory for microbial ecology. The ISME journal 8:1553–1565. Permalink

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2013

Vergin KL, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ. 2013. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. The ISME journal 7:1322–1332. Permalink

Zhao Y, Temperton B, Thrash JC, Schwalbach MS, Vergin KL, Landry ZC, Ellisman M, Deerinck T, Sullivan MB, Giovannoni SJ. 2013. Abundant SAR11 viruses in the ocean. Nature 494:357–360. Permalink

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2012

Temperton B, Giovannoni SJ. 2012. Metagenomics: microbial diversity through a scratched lens. Current opinion in microbiology 15:605–612. Permalink

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2011

Temperton B, Thomas S, Tait K, Parry H, Emery M, Allen M, Quinn J, Macgrath J, Gilbert J. 2011. Permanent draft genome sequence of Vibrio tubiashii strain NCIMB 1337 (ATCC19106). Standards in genomic sciences 4:183–190. Permalink

Gilbert JA, Steele JA, Caporaso JG, Steinbruck L, Reeder J, Temperton B, Huse S, McHardy AC, Knight R, Joint I, Somerfield P, Fuhrman JA, Field D. 2011. Defining seasonal marine microbial community dynamics. The ISME journal 6:298–308. Permalink

Temperton B, Gilbert JA, Quinn JP, McGrath JW. 2011. Novel analysis of oceanic surface water metagenomes suggests importance of polyphosphate metabolism in oligotrophic environments. PloS one 6:e16499. Permalink

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2010

Craft JA, Gilbert JA, Temperton B, Dempsey KE, Ashelford K, Tiwari B, Hutchinson TH, Chipman JK. 2010. Pyrosequencing of Mytilus galloprovincialis cDNAs: tissue-specific expression patterns. PloS one 5:e8875. Permalink

Beszteri B, Temperton B, Frickenhaus S, Giovannoni SJ. 2010. Average genome size: a potential source of bias in comparative metagenomics. The ISME journal 4:1075–1077. Permalink

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2009

Temperton B, Field D, Oliver A, Tiwari B, Muhling M, Joint I, Gilbert JA. 2009. Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. The ISME journal 3:792–796. Permalink

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